Running with gitlab-runner 17.0.0 (44feccdf)  on gitlab-com-saas-windows-medium-amd64 6Kj91tgzi, system ID: s_1a31f6141cb7 Resolving secrets section_start:1739420333:prepare_executor Preparing the "custom" executor Using Custom executor with driver autoscaler 0.1.3 (4f53eb0)... Creating virtual machine for the job... Virtual machine created! section_end:1739420502:prepare_executor section_start:1739420502:prepare_script Preparing environment Running on PACKER-666B03EC via runner-w21h2sm-9124699215... section_end:1739420511:prepare_script section_start:1739420511:get_sources Getting source from Git repository Fetching changes... Initialized empty Git repository in C:/GitLab-Runner/builds/Rdatatable/data.table/.git/ Created fresh repository. Checking out c29e313d as detached HEAD (ref is master)... git-lfs/2.8.0 (GitHub; windows amd64; go 1.12.2; git 30af66bb) Skipping Git submodules setup section_end:1739420532:get_sources section_start:1739420532:download_artifacts Downloading artifacts Version: 17.0.0 Git revision: 44feccdf Git branch: 17-0-stable GO version: go1.21.9 Built: 2024-05-16T13:46:12+0000 OS/Arch: windows/amd64 Downloading artifacts for build (9124699039)... Runtime platform  arch=amd64 os=windows pid=4812 revision=44feccdf version=17.0.0 Downloading artifacts for mirror-packages (9124699028)... Downloading artifacts from coordinator... ok  host=storage.googleapis.com id=9124699039 responseStatus=200 OK token=glcbt-66 Runtime platform  arch=amd64 os=windows pid=384 revision=44feccdf version=17.0.0 Downloading artifacts from coordinator... ok  host=storage.googleapis.com id=9124699028 responseStatus=200 OK token=glcbt-66 section_end:1739420542:download_artifacts section_start:1739420542:step_script Executing "step_script" stage of the job script WARNING: Starting with version 17.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/groups/gitlab-org/-/epics/6112 $ Invoke-WebRequest -Uri $R_BIN -OutFile ../R-win.exe -ErrorAction Stop; if (!(Test-Path -Path ..\R-win.exe)) {Write-Error "R-win.exe not found, download failed?"} $ Start-Process -FilePath ..\R-win.exe -ArgumentList "/VERYSILENT /DIR=C:\R" -NoNewWindow -Wait $ $VERSION = $RTOOLS_VERSION -replace '\.', '' $ Add-Content -Path ".\.Renviron" -Value "RTOOLS${VERSION}_HOME='/c/rtools'" $ $RTOOLS_BIN="https://github.com/r-hub/rtools${VERSION}/releases/download/latest/rtools${VERSION}.exe" $ Invoke-WebRequest -Uri $RTOOLS_BIN -OutFile ../rtools.exe -ErrorAction Stop; if (!(Test-Path -Path ..\rtools.exe)) {Write-Error "rtools.exe not found, download failed?"} $ Start-Process -FilePath ..\rtools.exe -ArgumentList "/VERYSILENT /DIR=C:\rtools" -NoNewWindow -Wait $ $env:PATH = "C:\R\bin;C:\rtools\usr\bin;$env:PATH" $ Rscript.exe -e "source('.ci/ci.R'); install.packages(dcf.dependencies('DESCRIPTION', which='all'), repos=file.path('file://',getwd(),'bus/mirror-packages/cran'), quiet=TRUE)" also installing the dependencies 'R.oo', 'R.methodsS3', 'evaluate', 'highr', 'xfun', 'commonmark' package 'R.oo' successfully unpacked and MD5 sums checked package 'R.methodsS3' successfully unpacked and MD5 sums checked package 'evaluate' successfully unpacked and MD5 sums checked package 'highr' successfully unpacked and MD5 sums checked package 'xfun' successfully unpacked and MD5 sums checked package 'commonmark' successfully unpacked and MD5 sums checked package 'bit64' successfully unpacked and MD5 sums checked package 'bit' successfully unpacked and MD5 sums checked package 'R.utils' successfully unpacked and MD5 sums checked package 'xts' successfully unpacked and MD5 sums checked package 'zoo' successfully unpacked and MD5 sums checked package 'yaml' successfully unpacked and MD5 sums checked package 'knitr' successfully unpacked and MD5 sums checked package 'markdown' successfully unpacked and MD5 sums checked $ cp.exe $(ls.exe -1t bus/build/data.table_*.tar.gz | head.exe -n 1) . $ R.exe CMD check --no-manual $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1) * using log directory 'C:/GitLab-Runner/builds/Rdatatable/data.table/data.table.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-manual' * checking for file 'data.table/DESCRIPTION' ... OK * this is package 'data.table' version '1.16.99' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'data.table' can be installed ... OK * checking installed package size ... NOTE installed size is 6.3Mb sub-directories of 1Mb or more: po 1.6Mb tests 1.8Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Warning in read_symbols_from_dll(so, rarch) : this requires 'objdump.exe' to be on the PATH Warning in read_symbols_from_dll(so, rarch) : this requires 'objdump.exe' to be on the PATH See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'S4.R' Running 'autoprint.R' Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK Running 'froll.R' Running 'knitr.R' Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK Running 'main.R' Running 'nafill.R' Running 'other.R' Running 'programming.R' Running 'types.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'datatable-benchmarking.Rmd' using 'UTF-8'... OK 'datatable-faq.Rmd' using 'UTF-8'... OK 'datatable-importing.Rmd' using 'UTF-8'... OK 'datatable-intro.Rmd' using 'UTF-8'... OK 'datatable-joins.Rmd' using 'UTF-8'... OK 'datatable-keys-fast-subset.Rmd' using 'UTF-8'... OK 'datatable-programming.Rmd' using 'UTF-8'... OK 'datatable-reference-semantics.Rmd' using 'UTF-8'... OK 'datatable-reshape.Rmd' using 'UTF-8'... OK 'datatable-sd-usage.Rmd' using 'UTF-8'... OK 'datatable-secondary-indices-and-auto-indexing.Rmd' using 'UTF-8'... OK OK * checking re-building of vignette outputs ... OK * DONE Status: 2 NOTEs $ R.exe CMD INSTALL --build $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1) See 'C:/GitLab-Runner/builds/Rdatatable/data.table/data.table.Rcheck/00check.log' for details. * installing to library 'C:/R/library' * installing *source* package 'data.table' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c assign.c -o assign.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c between.c -o between.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bmerge.c -o bmerge.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c chmatch.c -o chmatch.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cj.c -o cj.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c coalesce.c -o coalesce.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dogroups.c -o dogroups.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fastmean.c -o fastmean.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fcast.c -o fcast.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fifelse.c -o fifelse.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fmelt.c -o fmelt.o fifelse.c: In function 'fcaseR': fifelse.c:286:10: warning: 'ans_is_factor' may be used uninitialized [-Wmaybe-uninitialized] 286 | if (!naout && ans_is_factor) { | ^ fifelse.c:227:8: note: 'ans_is_factor' was declared here 227 | bool ans_is_factor; | ^~~~~~~~~~~~~ fifelse.c:287:14: warning: 'ans_levels' may be used uninitialized [-Wmaybe-uninitialized] 287 | if (!R_compute_identical(ans_levels, PROTECT(getAttrib(thens, R_LevelsSymbol)), 0)) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fifelse.c:220:19: note: 'ans_levels' was declared here 220 | SEXP ans_class, ans_levels; | ^~~~~~~~~~ gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c forder.c -o forder.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c frank.c -o frank.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fread.c -o fread.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c freadR.c -o freadR.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c froll.c -o froll.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c frollR.c -o frollR.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c frolladaptive.c -o frolladaptive.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fsort.c -o fsort.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fwrite.c -o fwrite.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fwriteR.c -o fwriteR.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gsumm.c -o gsumm.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c idatetime.c -o idatetime.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ijoin.c -o ijoin.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c inrange.c -o inrange.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nafill.c -o nafill.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c negate.c -o negate.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nqrecreateindices.c -o nqrecreateindices.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c openmp-utils.c -o openmp-utils.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c programming.c -o programming.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c quickselect.c -o quickselect.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rbindlist.c -o rbindlist.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c reorder.c -o reorder.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c shift.c -o shift.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c snprintf.c -o snprintf.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c subset.c -o subset.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c transpose.c -o transpose.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c types.c -o types.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c uniqlist.c -o uniqlist.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c vecseq.c -o vecseq.o gcc -I"C:/R/include" -DNDEBUG -I"/c/rtools/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wrappers.c -o wrappers.o gcc -shared -s -static-libgcc -o data.table.dll tmp.def assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz -L/c/rtools/x86_64-w64-mingw32.static.posix/lib/x64 -L/c/rtools/x86_64-w64-mingw32.static.posix/lib -LC:/R/bin/x64 -lR mv data.table.dll data_table.dll installing to C:/R/library/00LOCK-data.table/00new/data.table/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums $ -not (grep.exe "warning:" data.table.Rcheck\00install.out) False packaged installation of 'data.table' as data.table_1.16.99.zip * DONE (data.table) section_end:1739421969:step_script section_start:1739421969:after_script Running after_script Running after script... $ $env:PATH = "C:\R\bin;C:\rtools\usr\bin;$env:PATH" $ mkdir.exe -p bus/$CI_JOB_NAME $ Rscript.exe -e "cat(Sys.getenv('CI_JOB_ID'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'id'))" $ Rscript.exe -e "cat(Sys.getenv('CI_JOB_STATUS'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'status'))" $ Rscript.exe -e "cat(Sys.getenv('CI_JOB_IMAGE'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'image'))" $ Rscript.exe -e "to<-file.path('bus', Sys.getenv('CI_JOB_NAME'), 'data.table.Rcheck'); if (dir.exists(from<-'data.table.Rcheck')) invisible(file.rename(from, to)); dir.exists(to)" [1] TRUE $ Rscript.exe -e "from<-tail(list.files(pattern='^data\\.table_.*\\.zip$'), 1L); to<-file.path('bus', Sys.getenv('CI_JOB_NAME'), from); if (length(from)) invisible(file.rename(from, to)); length(to)&&file.exists(to)" [1] TRUE section_end:1739421978:after_script section_start:1739421978:upload_artifacts_on_success Uploading artifacts for successful job Version: 17.0.0 Git revision: 44feccdf Git branch: 17-0-stable GO version: go1.21.9 Built: 2024-05-16T13:46:12+0000 OS/Arch: windows/amd64 Uploading artifacts... Runtime platform  arch=amd64 os=windows pid=2820 revision=44feccdf version=17.0.0 bus/test-win-old: found 631 matching artifact files and directories Uploading artifacts as "archive" to coordinator... 201 Created id=9124699215 responseStatus=201 Created token=glcbt-66 section_end:1739421989:upload_artifacts_on_success section_start:1739421989:cleanup_file_variables Cleaning up project directory and file based variables section_end:1739421991:cleanup_file_variables Job succeeded