Running with gitlab-runner 17.9.0~pre.88.g5835694a (5835694a)  on green-2.saas-macos-medium-m1.runners-manager.gitlab.com/default zxQ9CHzH, system ID: s_4366a769b6ab Resolving secrets section_start:1739420331:prepare_executor Preparing the "instance" executor Preparing instance... Dialing instance i-0a2cf757558cb11c5... Instance i-0a2cf757558cb11c5 connected Enforcing VM Isolation Creating nesting VM tunnel Creating nesting VM macos-14-xcode-15 Dialing nesting daemon Created nesting VM wuupntu8 127.0.0.1:50639 section_end:1739420347:prepare_executor section_start:1739420347:prepare_script Preparing environment Running on gitlabs-Virtual-Machine.local via runners-manager-saas-macos-medium-m1-green-2... section_end:1739420356:prepare_script section_start:1739420356:get_sources Getting source from Git repository Fetching changes... Initialized empty Git repository in /Users/gitlab/builds/Rdatatable/data.table/.git/ Created fresh repository. failed to store: -25308 Checking out c29e313d as detached HEAD (ref is master)... Skipping Git submodules setup section_end:1739420360:get_sources section_start:1739420360:download_artifacts Downloading artifacts Downloading artifacts for build (9124699039)... Runtime platform  arch=arm64 os=darwin pid=1290 revision=a1fca00e version=17.8.1 Downloading artifacts from coordinator... ok  host=cdn.artifacts.gitlab-static.net id=9124699039 responseStatus=200 OK token=glcbt-66 Downloading artifacts for mirror-packages (9124699028)... WARNING: bus/build/: lchown bus/build/: operation not permitted (suppressing repeats) Runtime platform  arch=arm64 os=darwin pid=1292 revision=a1fca00e version=17.8.1 Downloading artifacts from coordinator... ok  host=cdn.artifacts.gitlab-static.net id=9124699028 responseStatus=200 OK token=glcbt-66 WARNING: bus/mirror-packages/: lchown bus/mirror-packages/: operation not permitted (suppressing repeats) section_end:1739420364:download_artifacts section_start:1739420364:step_script Executing "step_script" stage of the job script $ curl -O $R_BIN % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 68 93.3M 68 63.6M 0 0 99.9M 0 --:--:-- --:--:-- --:--:-- 99.9M 94 93.3M 94 87.8M 0 0 23.8M 0 0:00:03 0:00:03 --:--:-- 23.8M$ sudo installer -pkg "$(ls -1t R-*-arm64.pkg | head -n 1)" -target / 100 93.3M 100 93.3M 0 0 25.0M 0 0:00:03 0:00:03 --:--:-- 25.0M installer: Package name is R 4.4.1 for macOS (ARM64) installer: Installing at base path / installer: The install was successful. $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' also installing the dependencies ‘R.oo’, ‘R.methodsS3’, ‘evaluate’, ‘highr’, ‘xfun’, ‘commonmark’ $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . $ R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1) * using log directory ‘/Users/gitlab/builds/Rdatatable/data.table/data.table.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Sonoma 14.6.1 * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘data.table/DESCRIPTION’ ... OK * this is package ‘data.table’ version ‘1.16.99’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘data.table’ can be installed ... OK * used C compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’ * used SDK: ‘’ * checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: po 1.6Mb tests 1.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘autoprint.R’ Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ Running ‘knitr.R’ Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ Running ‘nafill.R’ Running ‘other.R’ Running ‘programming.R’ Running ‘S4.R’ Running ‘types.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... See ‘/Users/gitlab/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ for details. OK * DONE Status: 1 NOTE $ R CMD INSTALL --build $(ls -1t data.table_*.tar.gz | head -n 1) * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘data.table’ ... ** using staged installation zlib 1.2.12 is available ok * checking if R installation supports OpenMP with "-Xclang -fopenmp" ... no * checking if R installation supports OpenMP with "-fopenmp" ... no * checking if libomp installation at /opt/homebrew/opt/libomp can be used... yes ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c assign.c -o assign.o using C compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’ using SDK: ‘’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c between.c -o between.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c bmerge.c -o bmerge.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c chmatch.c -o chmatch.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c cj.c -o cj.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c coalesce.c -o coalesce.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c dogroups.c -o dogroups.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fastmean.c -o fastmean.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fcast.c -o fcast.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fifelse.c -o fifelse.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fmelt.c -o fmelt.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c forder.c -o forder.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c frank.c -o frank.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fread.c -o fread.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c freadR.c -o freadR.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c froll.c -o froll.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c frollR.c -o frollR.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c frolladaptive.c -o frolladaptive.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fsort.c -o fsort.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fwrite.c -o fwrite.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c fwriteR.c -o fwriteR.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c gsumm.c -o gsumm.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c idatetime.c -o idatetime.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c ijoin.c -o ijoin.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c inrange.c -o inrange.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c nafill.c -o nafill.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c negate.c -o negate.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c nqrecreateindices.c -o nqrecreateindices.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c openmp-utils.c -o openmp-utils.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c programming.c -o programming.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c quickselect.c -o quickselect.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c rbindlist.c -o rbindlist.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c reorder.c -o reorder.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c shift.c -o shift.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c snprintf.c -o snprintf.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c subset.c -o subset.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c transpose.c -o transpose.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c types.c -o types.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c uniqlist.c -o uniqlist.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c utils.c -o utils.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c vecseq.c -o vecseq.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp -fPIC -falign-functions=64 -Wall -g -O2 -c wrappers.c -o wrappers.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -L/opt/homebrew/opt/libomp/lib -lomp -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation PKG_CFLAGS = -I/opt/homebrew/opt/libomp/include -Xclang -fopenmp PKG_LIBS = -L/opt/homebrew/opt/libomp/lib -lomp -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘data.table’ as ‘data.table_1.16.99.tgz’ * DONE (data.table) section_end:1739420475:step_script section_start:1739420475:after_script Running after_script Running after script... $ mkdir -p bus/$CI_JOB_NAME $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ $ [ -f data.table_*.tgz ] && mv $(ls -1t data.table_*.tgz | head -n 1) bus/$CI_JOB_NAME/ $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image section_end:1739420475:after_script section_start:1739420475:upload_artifacts_on_success Uploading artifacts for successful job Uploading artifacts... Runtime platform  arch=arm64 os=darwin pid=8333 revision=a1fca00e version=17.8.1 bus/test-mac-rel: found 641 matching artifact files and directories Uploading artifacts as "archive" to coordinator... 201 Created id=9124699235 responseStatus=201 Created token=glcbt-66 section_end:1739420479:upload_artifacts_on_success section_start:1739420479:cleanup_file_variables Cleaning up project directory and file based variables section_end:1739420479:cleanup_file_variables Job succeeded