Running with gitlab-runner 17.10.0~pre.41.g5c23fd8e (5c23fd8e)  on green-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default g2po1APs, system ID: s_dcb821077a82 Resolving secrets section_start:1742530736:prepare_executor Preparing the "docker+machine" executor Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... Authenticating with credentials from job payload (GitLab Registry) Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... Using docker image sha256:4cb35d31e70cf58ef105358eb8a01a00b091e89b004a6fa761129da6ca6e3e2b for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:6c8a489601c165b1f3cb769640b31143b3ae98ffbda97569e52437f0c7f044ac ... section_end:1742530750:prepare_executor section_start:1742530750:prepare_script Preparing environment Running on runner-g2po1aps-project-3622566-concurrent-0 via runner-g2po1aps-s-l-m-amd64-1742530606-6b3ed072... section_end:1742530760:prepare_script section_start:1742530760:get_sources Getting source from Git repository Fetching changes... Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ Created fresh repository. Checking out 09090480 as detached HEAD (ref is master)... Skipping Git submodules setup $ git remote set-url origin "${CI_REPOSITORY_URL}" section_end:1742530766:get_sources section_start:1742530766:download_artifacts Downloading artifacts Downloading artifacts for build (9478998722)... Downloading artifacts from coordinator... ok  host=storage.googleapis.com id=9478998722 responseStatus=200 OK token=66_5hxfPR Downloading artifacts for mirror-packages (9478998713)... Downloading artifacts from coordinator... ok  host=storage.googleapis.com id=9478998713 responseStatus=200 OK token=66_5hxfPR section_end:1742530768:download_artifacts section_start:1742530768:step_script Executing "step_script" stage of the job script Using docker image sha256:4cb35d31e70cf58ef105358eb8a01a00b091e89b004a6fa761129da6ca6e3e2b for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:6c8a489601c165b1f3cb769640b31143b3ae98ffbda97569e52437f0c7f044ac ... $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . $ mkdir -p ~/.R $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' also installing the dependencies ‘R.oo’, ‘R.methodsS3’, ‘evaluate’, ‘highr’, ‘xfun’, ‘commonmark’ $ echo 'CFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars $ echo 'CXXFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars $ R CMD check $(ls -1t data.table_*.tar.gz | head -n 1) * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ * using R version 4.3.2 (2023-10-31) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Debian 13.2.0-6) 13.2.0 GNU Fortran (Debian 13.2.0-6) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘data.table/DESCRIPTION’ ... OK * this is package ‘data.table’ version ‘1.17.99’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for .dll and .exe files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘data.table’ can be installed ... OK * used C compiler: ‘gcc (Debian 13.2.0-5) 13.2.0’ * checking installed package size ... NOTE installed size is 7.8Mb sub-directories of 1Mb or more: libs 2.2Mb po 1.6Mb tests 1.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘autoprint.R’ Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ Running ‘knitr.R’ Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ Running ‘nafill.R’ Running ‘other.R’ Running ‘programming.R’ Running ‘S4.R’ Running ‘types.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘datatable-benchmarking.Rmd’ using ‘UTF-8’... OK ‘datatable-faq.Rmd’ using ‘UTF-8’... OK ‘datatable-importing.Rmd’ using ‘UTF-8’... OK ‘datatable-intro.Rmd’ using ‘UTF-8’... OK ‘datatable-joins.Rmd’ using ‘UTF-8’... OK ‘datatable-keys-fast-subset.Rmd’ using ‘UTF-8’... OK ‘datatable-programming.Rmd’ using ‘UTF-8’... OK ‘datatable-reference-semantics.Rmd’ using ‘UTF-8’... OK ‘datatable-reshape.Rmd’ using ‘UTF-8’... OK ‘datatable-sd-usage.Rmd’ using ‘UTF-8’... OK ‘datatable-secondary-indices-and-auto-indexing.Rmd’ using ‘UTF-8’... OK OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ for details. $ (! grep "warning:" data.table.Rcheck/00install.out) section_end:1742530948:step_script section_start:1742530948:after_script Running after_script Running after script... $ mkdir -p bus/$CI_JOB_NAME $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ section_end:1742530948:after_script section_start:1742530948:upload_artifacts_on_success Uploading artifacts for successful job Uploading artifacts... bus/test-lin-rel: found 639 matching artifact files and directories Uploading artifacts as "archive" to coordinator... 201 Created id=9478998750 responseStatus=201 Created token=66_5hxfPR section_end:1742530952:upload_artifacts_on_success section_start:1742530952:cleanup_file_variables Cleaning up project directory and file based variables section_end:1742530952:cleanup_file_variables Job succeeded