Running with gitlab-runner 18.2.0~pre.84.g53e970be (53e970be)  on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu, system ID: s_eacbc5a4b586 Resolving secrets section_start:1752553114:prepare_executor Preparing the "docker+machine" executor Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ... Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base Authenticating with credentials from job payload (GitLab Registry) Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ... Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ... section_end:1752553129:prepare_executor section_start:1752553129:prepare_script Preparing environment Using effective pull policy of [always] for container sha256:f5bb38c7852f2794fe5ed2cb6eb1ab5a0333b698cf748708efeb4fe877cfa55e Running on runner-ds1-6adu-project-3622566-concurrent-0 via runner-ds1-6adu-s-l-m-amd64-1752553068-be76d379... section_end:1752553141:prepare_script section_start:1752553141:get_sources Getting source from Git repository Gitaly correlation ID: aefeb4badba252598d8aa9bfe182c28c Fetching changes... Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ Created fresh repository. Checking out 67670e99 as detached HEAD (ref is master)... Skipping Git submodules setup $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' section_end:1752553147:get_sources section_start:1752553147:download_artifacts Downloading artifacts Downloading artifacts for build (10682361431)... Downloading artifacts from coordinator... ok  correlation_id= host=storage.googleapis.com id=10682361431 responseStatus=200 OK token=68_dpDv8T Downloading artifacts for mirror-packages (10682361376)... Downloading artifacts from coordinator... ok  correlation_id= host=storage.googleapis.com id=10682361376 responseStatus=200 OK token=68_dpDv8T section_end:1752553149:download_artifacts section_start:1752553149:step_script Executing "step_script" stage of the job script Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ... $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . $ mkdir -p ~/.R $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' also installing the dependencies ‘commonmark’, ‘R.oo’, ‘R.methodsS3’, ‘evaluate’, ‘highr’, ‘xfun’, ‘litedown’ $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ * using R version 4.5.0 (2025-04-11) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Debian 14.2.0-19) 14.2.0 GNU Fortran (Debian 14.2.0-19) 14.2.0 * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * using option ‘--as-cran’ * checking for file ‘data.table/DESCRIPTION’ ... OK * this is package ‘data.table’ version ‘1.17.99’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for .dll and .exe files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘data.table’ can be installed ... [23s/23s] OK * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s/15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... NOTE File ‘data.table/libs/data_table.so’: Found non-API calls to R: ‘Rf_isFrame’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘autoprint.R’ Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ Running ‘knitr.R’ Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ [43s/39s] Running ‘mergelist.R’ Running ‘nafill.R’ Running ‘other.R’ Running ‘programming.R’ Running ‘S4.R’ Running ‘types.R’ [57s/53s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [25s/26s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE See ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ for details. section_end:1752553368:step_script section_start:1752553368:after_script Running after_script Running after script... $ mkdir -p bus/$CI_JOB_NAME $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ section_end:1752553369:after_script section_start:1752553369:upload_artifacts_on_success Uploading artifacts for successful job Uploading artifacts... bus/test-lin-rel-cran: found 656 matching artifact files and directories Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=8109217520017295eac1444522cd3656 id=10682361541 responseStatus=201 Created token=68_dpDv8T section_end:1752553372:upload_artifacts_on_success section_start:1752553372:cleanup_file_variables Cleaning up project directory and file based variables section_end:1752553373:cleanup_file_variables Job succeeded